Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain 144bp-OG3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418061 bp
Thymine Count
1414440 bp
Guanine Count
971104 bp
Cytosine Count
957116 bp
Genome Length
4760721 bp
Protein-coding Genes
4126 genes
Non-Coding Genes
87 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent malic enzyme | FD718_13285 | Not Available | Negative | 2939139 - 2940854 | 63716.1 |
| lysr family transcriptional regulator | FD718_13290 | Not Available | Positive | 2941154 - 2941957 | 28840.9 |
| d-ribose pyranase | FD718_13295 | Not Available | Positive | 2942580 - 2942999 | 15158.4 |
| ribose abc transporter atp-binding protein rbsa | FD718_13300 | Not Available | Positive | 2943058 - 2944563 | 54797.6 |
| ribose abc transporter permease | FD718_13305 | Not Available | Positive | 2944560 - 2945546 | 34504.1 |
| ribose abc transporter substrate-binding protein rbsb | FD718_13310 | Not Available | Positive | 2945620 - 2946498 | 30677.0 |
| ribokinase | FD718_13315 | Not Available | Positive | 2946678 - 2947598 | 32074.5 |
| laci family dna-binding transcriptional regulator | FD718_13320 | Not Available | Positive | 2947785 - 2948792 | 37626.5 |
| fcd domain-containing protein | FD718_13325 | Not Available | Negative | 2949014 - 2949712 | 26898.1 |
| glycine cleavage system aminomethyltransferase gcvt | FD718_13330 | Not Available | Negative | 2950075 - 2951193 | 40975.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


