Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain 144bp-OG3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418061 bp
Thymine Count
1414440 bp
Guanine Count
971104 bp
Cytosine Count
957116 bp
Genome Length
4760721 bp
Protein-coding Genes
4126 genes
Non-Coding Genes
87 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme exporter protein ccmb | FD718_12215 | Not Available | Positive | 2700943 - 2701611 | 23818.5 |
| heme abc transporter permease | FD718_12220 | Not Available | Positive | 2701837 - 2702568 | 27627.2 |
| heme exporter protein ccmd | FD718_12225 | Not Available | Positive | 2702576 - 2702782 | 7850.78 |
| cytochrome c maturation protein ccme | FD718_12230 | Not Available | Positive | 2702779 - 2703258 | 17575.5 |
| heme lyase ccmf/nrfe family subunit | FD718_12235 | Not Available | Positive | 2703262 - 2705223 | 72381.4 |
| dsbe family thiol:disulfide interchange protein | FD718_12240 | Not Available | Positive | 2705235 - 2705789 | 20918.4 |
| cytochrome c-type biogenesis protein ccmh | FD718_12245 | Not Available | Positive | 2705786 - 2706310 | 19683.7 |
| c-type cytochrome biogenesis protein ccmi | FD718_12250 | Not Available | Positive | 2706307 - 2707587 | 47512.1 |
| vacj family lipoprotein | FD718_12255 | Not Available | Positive | 2707870 - 2708673 | 29945.1 |
| aromatic hydrocarbon degradation protein | FD718_12260 | Not Available | Negative | 2708763 - 2710097 | 47495.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


