Helicobacter pametensis strain NCTC12888

microaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pametensis strain NCTC12888 is a microaerophilic bacterium, which indicates that it requires a reduced level of oxygen for growth, typically between 5-10% oxygen concentration. This trait is significant as it influences the bacterium's ecological niche, often associated with environments where oxygen levels are lower than atmospheric conditions, such as in the stomachs of certain animals or in specific gastrointestinal ecosystems. The strain has a single replicon, which refers to having one circular chromosome, a common feature among many bacterial species, allowing for efficient replication and maintenance of its genetic material. The genetic information for this strain can be accessed through the accession number UYIU00000000.1, which provides a reference for researchers looking to study its genome and further understand its biology. Given its classification within the Helicobacter genus, H. pametensis may play a role in the complex microbial communities of the gastrointestinal tract. The microaerophilic nature of this strain suggests that it may interact with other bacteria that thrive under low-oxygen conditions, potentially influencing the overall microbial ecology and metabolic processes within its habitat. Understanding the traits of H. pametensis NCTC12888 can contribute to insights about its ecological roles and interactions within the microbiome, particularly in relation to host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pametensis
Strainstrain NCTC12888

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter pametensis strain NCTC12888
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pametensis strain NCTC12888 genome assembly, contig:

Gene Summary

Adenine Count

427696 bp

Thymine Count

434597 bp

Guanine Count

531763 bp

Cytosine Count

524300 bp

Genome Length

1918356 bp

Protein-coding Genes

1789 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
o-acetylserine/cysteine export proteinNCTC12888_00007Not AvailablePositive7512 - 837831273.4
nadp-dependent alcohol dehydrogenaseNCTC12888_00008Not AvailableNegative8504 - 954136120.7
homoserine kinaseNCTC12888_00009Not AvailablePositive9905 - 1117947248.7
thymidylate synthaseNCTC12888_00010Not AvailableNegative11251 - 1204530470.4
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdNCTC12888_00011Not AvailableNegative12243 - 1295627037.6
dna gyrase inhibitor yacgNCTC12888_00012Not AvailableNegative13017 - 131996957.14
protein of uncharacterised function (duf1342)NCTC12888_00013Not AvailableNegative13196 - 1397229930.6
dephospho-coa kinaseNCTC12888_00014Not AvailableNegative13976 - 1458121994.7
pectic enzymes secretion protein outoNCTC12888_00015Not AvailableNegative14583 - 1544031498.5
putative type ii secretion system proteinNCTC12888_00016Not AvailableNegative15530 - 1676545578.4

Displaying genes 71 – 80 of 1899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.