Helicobacter pametensis strain NCTC12888

microaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pametensis strain NCTC12888 is a microaerophilic bacterium, which indicates that it requires a reduced level of oxygen for growth, typically between 5-10% oxygen concentration. This trait is significant as it influences the bacterium's ecological niche, often associated with environments where oxygen levels are lower than atmospheric conditions, such as in the stomachs of certain animals or in specific gastrointestinal ecosystems. The strain has a single replicon, which refers to having one circular chromosome, a common feature among many bacterial species, allowing for efficient replication and maintenance of its genetic material. The genetic information for this strain can be accessed through the accession number UYIU00000000.1, which provides a reference for researchers looking to study its genome and further understand its biology. Given its classification within the Helicobacter genus, H. pametensis may play a role in the complex microbial communities of the gastrointestinal tract. The microaerophilic nature of this strain suggests that it may interact with other bacteria that thrive under low-oxygen conditions, potentially influencing the overall microbial ecology and metabolic processes within its habitat. Understanding the traits of H. pametensis NCTC12888 can contribute to insights about its ecological roles and interactions within the microbiome, particularly in relation to host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pametensis
Strainstrain NCTC12888

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter pametensis strain NCTC12888
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pametensis strain NCTC12888 genome assembly, contig:

Gene Summary

Adenine Count

427696 bp

Thymine Count

434597 bp

Guanine Count

531763 bp

Cytosine Count

524300 bp

Genome Length

1918356 bp

Protein-coding Genes

1789 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative outer membrane protein nmb0088 precursorNCTC12888_01757Not AvailablePositive1752732 - 175414751328.0
monoamine oxidaseNCTC12888_01758Not AvailableNegative1754452 - 175569645581.0
predicted exporterNCTC12888_01759Not AvailableNegative1755742 - 175805482348.5
acyl-coa synthetaseNCTC12888_01760Not AvailableNegative1758047 - 175970260566.1
uncharacterised proteinNCTC12888_01761Not AvailableNegative1759941 - 176057323460.6
lipoprotein chaperoneNCTC12888_01762Not AvailableNegative1760724 - 176132021870.6
acyl-coa thioesterase ybgcNCTC12888_01763Not AvailableNegative1761420 - 176186617277.8
lipid a biosynthesis lauroyl acyltransferaseNCTC12888_01764Not AvailableNegative1761859 - 176352362235.0
abc transporter atp-binding proteinNCTC12888_01765Not AvailableNegative1763606 - 176551671324.8
rebeccamycin o-methyltransferaseNCTC12888_01766Not AvailableNegative1765628 - 176628123969.8

Displaying genes 1751 – 1760 of 1899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.