Helicobacter pametensis strain NCTC12888

microaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pametensis strain NCTC12888 is a microaerophilic bacterium, which indicates that it requires a reduced level of oxygen for growth, typically between 5-10% oxygen concentration. This trait is significant as it influences the bacterium's ecological niche, often associated with environments where oxygen levels are lower than atmospheric conditions, such as in the stomachs of certain animals or in specific gastrointestinal ecosystems. The strain has a single replicon, which refers to having one circular chromosome, a common feature among many bacterial species, allowing for efficient replication and maintenance of its genetic material. The genetic information for this strain can be accessed through the accession number UYIU00000000.1, which provides a reference for researchers looking to study its genome and further understand its biology. Given its classification within the Helicobacter genus, H. pametensis may play a role in the complex microbial communities of the gastrointestinal tract. The microaerophilic nature of this strain suggests that it may interact with other bacteria that thrive under low-oxygen conditions, potentially influencing the overall microbial ecology and metabolic processes within its habitat. Understanding the traits of H. pametensis NCTC12888 can contribute to insights about its ecological roles and interactions within the microbiome, particularly in relation to host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pametensis
Strainstrain NCTC12888

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter pametensis strain NCTC12888
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pametensis strain NCTC12888 genome assembly, contig:

Gene Summary

Adenine Count

427696 bp

Thymine Count

434597 bp

Guanine Count

531763 bp

Cytosine Count

524300 bp

Genome Length

1918356 bp

Protein-coding Genes

1789 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine permease yuifNCTC12888_01355Not AvailablePositive1347544 - 134892948251.7
slyxNCTC12888_01356Not AvailablePositive1348929 - 13491538317.69
Tmrna,resume consensus sequence (at 85): aatagtcgcaaacgacgaNot AvailableNot AvailablePositive1349882 - 1350244Not Available
50s ribosomal protein l20NCTC12888_01358Not AvailableNegative1350473 - 135082913567.9
50s ribosomal protein l35NCTC12888_01359Not AvailableNegative1350843 - 13510407449.41
translation initiation factor if-3NCTC12888_01360Not AvailableNegative1351191 - 135165817709.8
o-acetyl-adp-ribose deacetylaseNCTC12888_01361Not AvailableNegative1352008 - 135252018027.5
primosome assembly protein priaNCTC12888_01362Not AvailablePositive1352823 - 135502480226.8
fosfomycin resistance protein fosbNCTC12888_01363Not AvailableNegative1355392 - 135576314423.4
uncharacterised proteinNCTC12888_01364Not AvailableNegative1355760 - 135634422173.0

Displaying genes 1411 – 1420 of 1899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.