Helicobacter pametensis strain NCTC12888

microaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pametensis strain NCTC12888 is a microaerophilic bacterium, which indicates that it requires a reduced level of oxygen for growth, typically between 5-10% oxygen concentration. This trait is significant as it influences the bacterium's ecological niche, often associated with environments where oxygen levels are lower than atmospheric conditions, such as in the stomachs of certain animals or in specific gastrointestinal ecosystems. The strain has a single replicon, which refers to having one circular chromosome, a common feature among many bacterial species, allowing for efficient replication and maintenance of its genetic material. The genetic information for this strain can be accessed through the accession number UYIU00000000.1, which provides a reference for researchers looking to study its genome and further understand its biology. Given its classification within the Helicobacter genus, H. pametensis may play a role in the complex microbial communities of the gastrointestinal tract. The microaerophilic nature of this strain suggests that it may interact with other bacteria that thrive under low-oxygen conditions, potentially influencing the overall microbial ecology and metabolic processes within its habitat. Understanding the traits of H. pametensis NCTC12888 can contribute to insights about its ecological roles and interactions within the microbiome, particularly in relation to host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pametensis
Strainstrain NCTC12888

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter pametensis strain NCTC12888
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pametensis strain NCTC12888 genome assembly, contig:

Gene Summary

Adenine Count

427696 bp

Thymine Count

434597 bp

Guanine Count

531763 bp

Cytosine Count

524300 bp

Genome Length

1918356 bp

Protein-coding Genes

1789 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterised proteinNCTC12888_01064Not AvailableNegative1057324 - 105770714229.0
alanine racemaseNCTC12888_01065Not AvailableNegative1057864 - 105891938161.8
major antigenic peptide peb3-cell binding factor 2NCTC12888_01066Not AvailableNegative1059112 - 106006534713.5
outer membrane protein imp, required for envelope biogenesis / organic solvent tolerance protein precursorNCTC12888_01067Not AvailableNegative1060062 - 106234486525.2
predicted phosphotransferase related to ser/thr protein kinasesNCTC12888_01068Not AvailablePositive1062435 - 106343939319.2
caax amino terminal protease self- immunityNCTC12888_01069Not AvailablePositive1063627 - 106443630463.1
3-dehydroquinate synthaseNCTC12888_01070Not AvailableNegative1064621 - 106570039264.6
shikimate kinase iNCTC12888_01071Not AvailableNegative1065697 - 106624520668.1
type iv pilus biogenesis and competence protein pilq precursorNCTC12888_01072Not AvailableNegative1066275 - 106839876673.4
pilus assembly protein, pilpNCTC12888_01073Not AvailableNegative1068420 - 106895919961.7

Displaying genes 1121 – 1130 of 1899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.