Klebsiella pneumoniae strain EuSCAPE_IT365

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT365 is a Gram-negative, rod-shaped bacterium that exhibits a range of pathogenic characteristics, making it a significant concern in clinical settings. This strain is a facultative anaerobe and utilizes a chemoheterotrophic metabolism, allowing it to thrive in various environments, particularly those associated with human hosts. It is capable of forming chains, pairs, or existing as single cells, and displays mobility due to the presence of flagella. Optimal growth occurs at 37°C, aligning with the typical human body temperature, and it falls within the mesophilic temperature range. EuSCAPE_IT365 has a biotic relationship characterized as free-living, yet it is associated with numerous hosts, including Homo sapiens and various animal species such as Gallus gallus and Sus scrofa. The health implications of this strain are extensive, as it is linked to a wide array of infections including bacteremia, pneumonia, urinary tract infections, and more severe conditions such as sepsis and meningitis. The strain's ability to cause infections across different systems underscores its pathogenicity in humans, particularly in vulnerable populations. The presence of a single replicon and a double membrane structure is typical for this genus, which is known for its resilience and adaptability. The ecological insight from K. pneumoniae strain EuSCAPE_IT365 is its role in both commensal and pathogenic contexts within diverse host organisms, indicating its potential for transmission across species and its impact on public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT365

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT365
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT365 genome assembly,

Gene Summary

Adenine Count

1207182 bp

Thymine Count

1209284 bp

Guanine Count

1610180 bp

Cytosine Count

1612992 bp

Genome Length

5639638 bp

Protein-coding Genes

5001 genes

Non-Coding Genes

445 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-dehydro-3-deoxygalactonokinaseSAMEA3538763_04564Not AvailablePositive4761517 - 476239531165.2
2-dehydro-3-deoxyphosphogluconate aldolaseSAMEA3538763_04565Not AvailablePositive4762379 - 476299621539.9
galactonate dehydrataseSAMEA3538763_04566Not AvailablePositive4762993 - 476414142547.3
d-galactonate transporterSAMEA3538763_04567Not AvailablePositive4764364 - 476565647232.5
protein of uncharacterised function (duf3748)SAMEA3538763_04568Not AvailablePositive4765708 - 476692844757.3
outer membrane lipoprotein yidqSAMEA3538763_04569Not AvailableNegative4766930 - 476726211806.3
heat shock protein ibpaSAMEA3538763_04570Not AvailablePositive4767577 - 476799015706.6
16 kda heat shock protein bSAMEA3538763_04571Not AvailablePositive4768107 - 476853515942.8
dna-damage-inducible protein dSAMEA3538763_04572Not AvailablePositive4768672 - 476949631139.8
mediator of hyperadherence yideSAMEA3538763_04573Not AvailablePositive4769598 - 477125958930.8

Displaying genes 4681 – 4690 of 5446 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total