Klebsiella pneumoniae strain EuSCAPE_IT138

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT138 is a Gram-negative, rod-shaped bacterium belonging to the family Enterobacteriaceae. It displays a facultative anaerobic metabolism and utilizes chemoheterotrophic energy sources. This strain exhibits a unique cell arrangement in chains, pairs, and singles, and is motile due to the presence of flagella. EuSCAPE_IT138 is mesophilic, with an optimal growth temperature of 37°C, and it possesses two membranes and a single replicon. It is a free-living organism primarily associated with various hosts, including Homo sapiens, Gallus gallus, and several other metazoans and plants. This strain is notable for its pathogenicity in humans, contributing to a wide range of health issues, including bacteremia, urinary tract infections, pneumonia, and more severe conditions such as meningitis and sepsis. The ability of Klebsiella pneumoniae to cause multiple infections underscores its role as a significant opportunistic pathogen, particularly in immunocompromised individuals. The diverse host range of EuSCAPE_IT138, which includes mammals, birds, amphibians, and even plants, suggests a complex ecological adaptability. This adaptability may facilitate its transmission and persistence in various environments, highlighting the importance of understanding this pathogen's biology in both clinical and ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT138

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT138
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT138 genome assembly,

Gene Summary

Adenine Count

1199785 bp

Thymine Count

1203511 bp

Guanine Count

1614591 bp

Cytosine Count

1588457 bp

Genome Length

5606344 bp

Protein-coding Genes

5100 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pin domain-containing proteinSAMEA3515167_04266Not AvailablePositive4495179 - 449556214378.5
formate dehydrogenase formation protein fdheSAMEA3515167_04267Not AvailableNegative4495736 - 449666534627.5
formate dehydrogenase o subunit gammaSAMEA3515167_04268Not AvailableNegative4496662 - 449729724704.7
formate dehydrogenase o subunit betaSAMEA3515167_04269Not AvailableNegative4497294 - 449819633089.1
formate dehydrogenase-o, major subunit, selenocysteine-containingSAMEA3515167_04270Not AvailableNegative4498209 - 450062389367.8
formate dehydrogenase-o alpha subunitSAMEA3515167_04271Not AvailableNegative4500672 - 450125921341.4
formate dehydrogenase subunit dSAMEA3515167_04272Not AvailablePositive4501416 - 450225230289.7
protein ycfrSAMEA3515167_04273Not AvailablePositive4502381 - 45025937160.54
putative 6-phosphofructokinaseSAMEA3515167_04274Not AvailablePositive4502996 - 450397635781.7
sugar phosphotransferase component ii bSAMEA3515167_04275Not AvailablePositive4503988 - 450430211510.2

Displaying genes 4351 – 4360 of 5380 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total