Klebsiella pneumoniae strain EuSCAPE_IT112

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT112 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, exhibiting a facultative anaerobic metabolism as a chemoheterotroph. This organism displays mobility, facilitated by the presence of flagella, and typically arranges itself in chains, pairs, or singles. With an optimal growth temperature of 37°C, it falls within the mesophilic temperature range. This strain is notable for its pathogenicity in humans, being associated with various health complications, including bacteremia, urinary tract infections, pneumonia, cystitis, intra-abdominal infections, and liver abscesses, among others. Its ability to cause a wide range of infections underscores its significance as a clinical pathogen. Klebsiella pneumoniae strain EuSCAPE_IT112 has a biotic relationship characterized as free-living, yet it is known to infect a variety of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and several other vertebrate species, such as Danio rerio (zebrafish), Ovis aries (sheep), and Canis lupus familiaris (domestic dogs). This broad host range indicates its ecological versatility and potential for interspecies transmission. The organism contains a single replicon and is nonsporulating, with a double membrane structure typical of Gram-negative bacteria. Its capacity to cause significant health issues highlights not only its pathogenic potential but also raises concerns regarding its role in public health and the importance of monitoring its prevalence in both human and animal populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT112

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT112
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT112 genome assembly,

Gene Summary

Adenine Count

1213743 bp

Thymine Count

1217088 bp

Guanine Count

1622533 bp

Cytosine Count

1617187 bp

Genome Length

5670551 bp

Protein-coding Genes

5096 genes

Non-Coding Genes

390 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multiple antibiotic resistance protein marcSAMEA3515141_03945Not AvailablePositive4096017 - 409668523728.9
sugar efflux transporterSAMEA3515141_03946Not AvailableNegative4096754 - 409795342611.7
phenazine biosynthesis protein phzfSAMEA3515141_03947Not AvailablePositive4098155 - 409894629424.0
short-chain dehydrogenase/reductase sdrSAMEA3515141_03948Not AvailableNegative4099011 - 409968823352.4
yhch/yjgk/yial family proteinSAMEA3515141_03949Not AvailableNegative4099685 - 410015817224.7
putative glycosyl hydrolase, bnr repeat proteinSAMEA3515141_03950Not AvailableNegative4100155 - 410132142951.0
na+/solute symporterSAMEA3515141_03951Not AvailableNegative4101325 - 410273450824.1
dihydrodipicolinate synthaseSAMEA3515141_03952Not AvailableNegative4102811 - 410369531648.8
alcohol dehydrogenaseSAMEA3515141_03953Not AvailableNegative4103710 - 410485840134.7
inner membrane proteinSAMEA3515141_03954Not AvailablePositive4105033 - 410626843493.0

Displaying genes 4001 – 4010 of 5486 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total