Klebsiella pneumoniae strain EuSCAPE_IT013

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT013 is a Gram-negative, rod-shaped bacterium that exhibits a diverse host range, including Homo sapiens, various avian species, and several mammals such as Canis lupus familiaris and Sus scrofa. This strain is a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments, and it is identified as a chemoheterotroph, deriving energy from organic compounds. Its optimal growth temperature is 37°C, placing it within the mesophilic temperature range. EuSCAPE_IT013 demonstrates mobility due to the presence of flagella and typically arranges itself in chains, pairs, or as single cells. With a single replicon and a dual-membrane structure, it is classified as free-living, which indicates its potential for environmental persistence and adaptability. This strain is notably pathogenic to humans, associated with a range of serious health effects, including bacteremia, urinary tract infections, pneumonia, and sepsis, among others. Its ability to cause these infections underscores its significance in clinical microbiology, particularly in hospital settings where it can lead to severe complications such as septicemia and pulmonary infections. The ecological implications of Klebsiella pneumoniae strain EuSCAPE_IT013 extend beyond human health; its capability to inhabit various hosts suggests a complex interaction within different ecosystems. Understanding its pathogenicity and adaptability is crucial for developing effective infection control measures and therapeutic strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT013

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT013
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT013 genome assembly,

Gene Summary

Adenine Count

1211747 bp

Thymine Count

1205248 bp

Guanine Count

1607587 bp

Cytosine Count

1605049 bp

Genome Length

5629631 bp

Protein-coding Genes

5065 genes

Non-Coding Genes

411 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Adenine specific methyltransferaseSAMEA3538574_01970Not AvailableNegative2061508 - 206216424235.8
Hypothetical proteinSAMEA3538574_01971Not AvailableNegative2062161 - 20623195997.44
ExonucleaseSAMEA3538574_01972Not AvailableNegative2062316 - 206299625860.9
Putative phage recombination proteinSAMEA3538574_01973Not AvailableNegative2062993 - 206383831127.9
Host recbcd/sbccd enzymes inhibitorSAMEA3538574_01974Not AvailableNegative2063854 - 206413811046.6
uncharacterised proteinSAMEA3538574_01975Not AvailableNegative2064227 - 20644217350.69
uncharacterised proteinSAMEA3538574_01976Not AvailableNegative2064414 - 20645243905.04
CiSAMEA3538574_01977Not AvailableNegative2065087 - 206577625443.4
Helix-turn-helix domain-containing proteinSAMEA3538574_01978Not AvailablePositive2065904 - 20661378286.01
Cii proteinSAMEA3538574_01979Not AvailablePositive2066178 - 20663998110.72

Displaying genes 111 – 120 of 5476 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total