Klebsiella pneumoniae strain EuSCAPE_IT047

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT047 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism as a chemoheterotroph. It is characterized by its ability to grow in various arrangements, including chains, pairs, and singles. This strain is motile, possessing flagella, and thrives optimally at 37°C within a mesophilic temperature range. K. pneumoniae strain EuSCAPE_IT047 is known to have significant pathogenic potential in humans, being associated with multiple health conditions such as bacteremia, urinary tract infections, pneumonia, and a variety of intra-abdominal infections. It is also linked to severe outcomes like sepsis and neonatal sepsis, among others. This bacterium has a broad host range, infecting not only humans (Homo sapiens) but also a variety of other species, including domestic animals and livestock such as Gallus gallus (chickens), Sus scrofa (pigs), and Canis lupus familiaris (dogs), as well as aquatic organisms like Danio rerio (zebrafish). The biotic relationship of K. pneumoniae strain EuSCAPE_IT047 is categorized as free-living, indicating its adaptability to diverse environments including human hosts and various animal species. This adaptability, combined with its pathogenicity, underscores the ecological significance of K. pneumoniae as it contributes to both health challenges in humans and interactions within broader ecological systems. The presence of this strain in diverse hosts highlights the potential for cross-species transmission and raises concerns regarding its management in both clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT047

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT047
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT047 genome assembly,

Gene Summary

Adenine Count

1141858 bp

Thymine Count

1143813 bp

Guanine Count

1542307 bp

Cytosine Count

1528910 bp

Genome Length

5356888 bp

Protein-coding Genes

4878 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gp245SAMEA3515079_00167Not AvailableNegative168029 - 16883830480.2
Abc transporterSAMEA3515079_00168Not AvailableNegative168840 - 16983237597.8
peptide transport system permease protein sapcSAMEA3515079_00169Not AvailableNegative169832 - 17072231661.4
AttlNot AvailableNot AvailablePositive170708 - 170723Not Available
IntegraseSAMEA3515079_00170Not AvailablePositive170869 - 17208646837.8
Hypothetical proteinSAMEA3515079_00171Not AvailableNegative172554 - 17286211165.5
Hypothetical proteinSAMEA3515079_00172Not AvailableNegative172859 - 17351525367.5
Trna-pro;Not AvailableNot AvailablePositive172984 - 173060Not Available
Hypothetical proteinSAMEA3515079_00173Not AvailableNegative173512 - 1737338271.28
Cytosine methylaseSAMEA3515079_00174Not AvailableNegative173730 - 17480037941.2

Displaying genes 1 – 10 of 5049 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
MeningitisCausesPMC13168211
Neonatal sepsisCausesPMC13168211
PneumoniaCausesPMC13253921
Urinary tract infectionsCausesPMC13253921
BacteremiaCausesPMC13253921
Neonatal sepsisCausesPMC13253921
Pyogenic liver abscessCausesPMC13253921
MeningitisCausesPMC13253921
Early onset neonatal sepsisCausesPMC4560869
Pyogenic liver abscessCausesPMC7332619

Displaying health effects 21 – 30 of 53 in total