Klebsiella pneumoniae strain EuSCAPE_IT042

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT042 is a gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, making it capable of thriving in both aerobic and anaerobic environments. It is primarily chemoheterotrophic, relying on organic compounds for energy. This strain typically exists in various cellular arrangements, including chains, pairs, and singles, and possesses flagella, which contributes to its mobility. EuSCAPE_IT042 is mesophilic, with an optimal growth temperature of 37°C, which aligns with the human body temperature, indicating its adaptation to host-associated habitats. This strain is known to have a significant pathogenicity in humans and is associated with numerous health complications, including bacteremia, urinary tract infections, pneumonia, and various intra-abdominal infections. In addition to humans, it can infect a wide range of hosts, including various species of animals and plants, such as Gallus gallus (chickens), Canis lupus familiaris (domestic dogs), and Sus scrofa (pigs). Despite being free-living, Klebsiella pneumoniae demonstrates a strong association with its hosts, leading to severe health consequences such as sepsis and pneumonia. The wide array of potential hosts and the variety of infections it can cause highlight its ecological versatility and adaptability. Understanding the pathogenic mechanisms and interactions of this strain within its host environments is crucial for developing effective treatment and prevention strategies for the infections it causes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT042

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT042
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT042 genome assembly,

Gene Summary

Adenine Count

1205959 bp

Thymine Count

1210878 bp

Guanine Count

1616274 bp

Cytosine Count

1583982 bp

Genome Length

5617093 bp

Protein-coding Genes

5054 genes

Non-Coding Genes

306 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
O protein family proteinSAMEA3515074_01653Not AvailablePositive1779127 - 178009535311.8
Methyl-directed repair dna adenine methylaseSAMEA3515074_01654Not AvailablePositive1780301 - 178112530857.9
Holiday-junction resolvaseSAMEA3515074_01655Not AvailablePositive1781135 - 178151214241.3
Hypothetical proteinSAMEA3515074_01656Not AvailablePositive1781597 - 178250534405.4
protein of uncharacterised function (duf1133)SAMEA3515074_01657Not AvailablePositive1782519 - 178309721825.6
uncharacterised proteinSAMEA3515074_01658Not AvailablePositive1783249 - 17834888953.89
Holin proteinSAMEA3515074_01659Not AvailablePositive1783647 - 178395811052.8
Soluble endolysin proteinSAMEA3515074_01660Not AvailablePositive1783955 - 178449419722.5
HolinSAMEA3515074_01661Not AvailablePositive1784491 - 178483812630.2
Hypothetical proteinSAMEA3515074_01662Not AvailablePositive1784835 - 17851109706.56

Displaying genes 21 – 30 of 5360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total