Klebsiella pneumoniae strain EuSCAPE_IT039

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_IT039 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. It is classified as a chemoheterotroph, utilizing organic compounds for energy. The strain typically forms chains, pairs, or single cells, and possesses flagella, indicating mobility. EuSCAPE_IT039 is mesophilic, with an optimal growth temperature of 37°C, which aligns with the human body temperature, suggesting its adaptation to a host-associated habitat. The bacterium has a complex biotic relationship, being free-living while also capable of infecting a wide range of hosts, including Homo sapiens, various birds, mammals, amphibians, and plants. This strain is notably pathogenic to humans, associated with numerous health complications such as bacteremia, urinary tract infections, pneumonia, and sepsis, among others. Its ability to cause serious infections highlights its clinical significance, particularly in vulnerable populations. The diversity of infections it can cause indicates a versatile pathogenicity, making it a notable concern in medical microbiology. The presence of a single replicon and two membranes is characteristic of its Gram-negative structure, which may contribute to its virulence. Given its wide host range and pathogenic potential, Klebsiella pneumoniae strain EuSCAPE_IT039 plays a significant role in both human health and ecological dynamics, illustrating the interconnectedness of microbial life with vertebrate and plant hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_IT039

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_IT039
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_IT039 genome assembly,

Gene Summary

Adenine Count

1140476 bp

Thymine Count

1135928 bp

Guanine Count

1536266 bp

Cytosine Count

1531101 bp

Genome Length

5343771 bp

Protein-coding Genes

4823 genes

Non-Coding Genes

244 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidyl-prolyl cis-trans isomerase dSAMEA3515071_01934Not AvailablePositive2040837 - 204271167826.4
competence protein comeaSAMEA3515071_01935Not AvailablePositive2042860 - 204322812468.0
4-hydroxybenzoyl-coa thioesteraseSAMEA3515071_01936Not AvailablePositive2043340 - 204374115118.3
queuosine biosynthesis protein quecSAMEA3515071_01937Not AvailableNegative2043853 - 204455425640.8
oligopeptide abc transporter substrate-binding protein oppaSAMEA3515071_01938Not AvailableNegative2044621 - 204632164543.6
cof-like hydrolaseSAMEA3515071_01939Not AvailablePositive2046449 - 204726730374.6
cysteine synthase bSAMEA3515071_01940Not AvailableNegative2047312 - 204836438933.1
hth-type transcriptional regulator ybaoSAMEA3515071_01941Not AvailablePositive2048480 - 204893817355.1
abc transporter atp-binding proteinSAMEA3515071_01942Not AvailablePositive2048982 - 205075465630.0
putative multidrug transporter membrane-atp-binding componentsSAMEA3515071_01943Not AvailablePositive2050747 - 205252565210.8

Displaying genes 2041 – 2050 of 5067 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total