Klebsiella pneumoniae strain EuSCAPE_EE004

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_EE004 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, functioning as a chemoheterotroph. This strain is characterized by its ability to thrive at an optimal temperature of 37°C and is classified as mesophilic. It possesses flagella, which grants it mobility, and it presents in various arrangements, including chains, pairs, and singles. This strain is predominantly host-associated, with a diverse range of potential hosts, including Homo sapiens (humans), Gallus gallus (chickens), Danio rerio (zebrafish), and various other metazoan and plant species. Notably, Klebsiella pneumoniae is known for its significant pathogenicity in humans, associated with a variety of serious health effects such as bacteremia, urinary tract infections, pneumonia, and sepsis, among others. The strain is non-sporulating and has a single replicon and two membranes, which are characteristic features of its cellular structure. Its free-living nature allows it to survive in various environments, contributing to its ecological versatility. In summary, Klebsiella pneumoniae strain EuSCAPE_EE004 exemplifies a highly adaptable pathogen with implications for human health and potential interactions with a wide range of hosts. Its significant pathogenic potential underscores the importance of continued surveillance and research to understand its behavior and impact within both clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_EE004

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_EE004
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_EE004 genome assembly,

Gene Summary

Adenine Count

1164089 bp

Thymine Count

1165998 bp

Guanine Count

1559965 bp

Cytosine Count

1566540 bp

Genome Length

5456592 bp

Protein-coding Genes

4867 genes

Non-Coding Genes

302 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Dna adenine methylaseSAMEA3499908_01481Not AvailablePositive1560885 - 156182035074.7
Replication endonucleaseSAMEA3499908_01482Not AvailablePositive1561858 - 156400582021.9
uncharacterized conserved proteinSAMEA3499908_01483Not AvailablePositive1564263 - 156620974977.8
uncharacterised proteinSAMEA3499908_01484Not AvailablePositive1566193 - 156720939245.9
uncharacterised proteinSAMEA3499908_01485Not AvailablePositive1568136 - 156888229144.9
Portal proteinSAMEA3499908_01486Not AvailableNegative1569360 - 157042139502.5
OxidoreductaseSAMEA3499908_01487Not AvailableNegative1570415 - 157214265483.4
Capsid scaffolding proteinSAMEA3499908_01488Not AvailablePositive1572299 - 157313830515.8
Major capsid proteinSAMEA3499908_01489Not AvailablePositive1573148 - 157418238410.4
Small terminase subunitSAMEA3499908_01490Not AvailablePositive1574232 - 157508931021.8

Displaying genes 61 – 70 of 5169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total