Klebsiella pneumoniae strain EuSCAPE_TR239

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_TR239 is a Gram-negative, rod-shaped bacterium known for its pathogenic potential in humans. It is classified as a facultative anaerobe, capable of thriving in both oxygen-rich and low-oxygen environments, with an optimal growth temperature of 37°C, typical of mesophilic organisms. This strain is motile and possesses flagella, which may contribute to its ability to colonize various hosts. K. pneumoniae EuSCAPE_TR239 is primarily associated with human infections, leading to severe health issues such as bacteremia, urinary tract infections, pneumonia, and sepsis. In addition to humans, it has been identified in a wide array of hosts, including Gallus gallus (chickens), various Metazoa, and even some plants, indicating its ecological versatility. The bacterium demonstrates a free-living biotic relationship, suggesting its capability to exist independently in diverse environments. Notably, this strain does not form spores and contains a single replicon within its cellular structure, surrounded by two membranes. The health effects associated with K. pneumoniae EuSCAPE_TR239 highlight its significance in clinical settings, especially due to its role in serious infections like neonatal sepsis and pyogenic liver abscesses. The presence of K. pneumoniae in multiple host species underlines its ecological adaptability and potential for cross-species transmission. This adaptability, coupled with its pathogenicity, poses challenges for public health, necessitating ongoing monitoring and research to understand its behavior in various environments and its impact on both human and animal health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_TR239

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_TR239
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_TR239 genome assembly,

Gene Summary

Adenine Count

1187270 bp

Thymine Count

1187876 bp

Guanine Count

1569553 bp

Cytosine Count

1609535 bp

Genome Length

5554234 bp

Protein-coding Genes

4956 genes

Non-Coding Genes

330 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1710332 - 1710349Not Available
Late control d family proteinSAMEA3729840_01605Not AvailableNegative1710740 - 171187941658.3
Tail sheath monomerSAMEA3729840_01606Not AvailablePositive1712034 - 171320642613.9
Major tail tube proteinSAMEA3729840_01607Not AvailablePositive1713206 - 171372118928.4
Tail proteinSAMEA3729840_01608Not AvailablePositive1713767 - 171408411303.7
Tail tape measure proteinSAMEA3729840_01609Not AvailablePositive1714229 - 1717204105329.0
Tail proteinSAMEA3729840_01610Not AvailablePositive1717220 - 171765716444.9
Cd dcmp deaminaseSAMEA3729840_01611Not AvailablePositive1717905 - 171963565986.4
Tail fiber proteinSAMEA3729840_01612Not AvailableNegative1719866 - 172096338857.4
Hypothetical proteinSAMEA3729840_01613Not AvailableNegative1720963 - 17211758092.42

Displaying genes 61 – 70 of 5286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total