Klebsiella pneumoniae strain EuSCAPE_TR189

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_TR189 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, utilizing a chemoheterotrophic energy source. This strain is characterized by its mobility, facilitated by the presence of flagella, and typically organizes itself in chains, pairs, or as single cells. Optimal growth occurs at 37°C, and it thrives within a mesophilic temperature range. The bacterium has a biotic relationship described as free-living, and it possesses a single replicon and a double membrane structure. EuSCAPE_TR189 is associated with a wide array of hosts, including Homo sapiens (humans), various avian species, and other metazoans, indicating its versatility and potential for zoonotic transmission. Klebsiella pneumoniae is known for its pathogenicity in humans, contributing to numerous health complications such as bacteremia, urinary tract infections, pneumonia, cystitis, and various intra-abdominal infections. It is also implicated in severe conditions like sepsis, neonatal sepsis, and liver abscesses. The broad spectrum of diseases associated with this strain underlines its clinical significance, particularly in immunocompromised individuals and those with existing health issues. The ecological role of Klebsiella pneumoniae strain EuSCAPE_TR189 highlights its adaptability in diverse environments and host organisms. This adaptability may facilitate its persistence in both clinical and natural settings, making it essential for ongoing surveillance in public health and infectious disease research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_TR189

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_TR189
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_TR189 genome assembly,

Gene Summary

Adenine Count

1169731 bp

Thymine Count

1169975 bp

Guanine Count

1558220 bp

Cytosine Count

1562883 bp

Genome Length

5460809 bp

Protein-coding Genes

4991 genes

Non-Coding Genes

185 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-dependent l-serine/l-allo-threonine dehydrogenase ydfgSAMEA3729757_04468Not AvailableNegative4780965 - 478171427230.5
dipeptidyl carboxypeptidase dcpSAMEA3729757_04469Not AvailablePositive4781845 - 478389077156.2
uncharacterised proteinSAMEA3729757_04470Not AvailableNegative4783968 - 478435415110.1
arac family transcriptional regulatorSAMEA3729757_04471Not AvailablePositive4784382 - 478522431109.7
gifsy-2 prophage proteinSAMEA3729757_04472Not AvailableNegative4785275 - 478594925196.7
putative 2-component transcriptional regulatorSAMEA3729757_04473Not AvailableNegative4786423 - 478705823761.0
uncharacterised proteinSAMEA3729757_04474Not AvailableNegative4787468 - 47875723691.59
small heat shock proteinSAMEA3729757_04475Not AvailablePositive4788070 - 478854317588.8
protein implicated in dna repair function with reca and mutsSAMEA3729757_04476Not AvailablePositive4788709 - 478922117874.8
diguanylate cyclase/phosphodiesterase domain 2 (eal)SAMEA3729757_04477Not AvailableNegative4789242 - 479045945024.7

Displaying genes 4521 – 4530 of 5176 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total