Klebsiella pneumoniae strain EuSCAPE_TR062

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_TR062 is a gram-negative, rod-shaped bacterium classified as a facultative anaerobe and a chemoheterotroph. This strain is notable for its mobility, facilitated by the presence of flagella, and typically exhibits a cell arrangement in chains, pairs, or singles. It thrives at an optimal temperature of 37°C, indicating its mesophilic nature. As a free-living organism, EuSCAPE_TR062 has a diverse range of potential hosts, including Homo sapiens (humans), various domesticated animals such as Gallus gallus (chickens), Sus scrofa (pigs), and Canis lupus familiaris (dogs), as well as other metazoans and plants. This broad host range suggests the organism's ecological versatility and potential for transmission across different species. Clinically, this strain is associated with a variety of significant health effects in humans, including bacteremia, urinary tract infections, pneumonia, and more severe conditions such as sepsis and meningitis. The presence of Klebsiella pneumoniae in clinical settings highlights its pathogenicity and the potential for causing serious infections, particularly in vulnerable populations such as neonates. Understanding the ecological role and pathogenic potential of Klebsiella pneumoniae strain EuSCAPE_TR062 is crucial, as it underscores the importance of monitoring this organism in both health and disease contexts. Its ability to inhabit multiple environments and host species may facilitate its survival and spread, posing ongoing challenges for public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_TR062

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_TR062
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_TR062 genome assembly,

Gene Summary

Adenine Count

1176352 bp

Thymine Count

1184760 bp

Guanine Count

1599941 bp

Cytosine Count

1563690 bp

Genome Length

5524743 bp

Protein-coding Genes

4948 genes

Non-Coding Genes

331 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive617627 - 617638Not Available
Translation initiation factor 3SAMEA3729745_00615Not AvailableNegative618880 - 61931416595.4
Threonyl-trna synthetaseSAMEA3729745_00616Not AvailableNegative619426 - 62135473927.2
Hypothetical proteinSAMEA3729745_00617Not AvailableNegative621720 - 62203711083.1
Hypothetical proteinSAMEA3729745_00618Not AvailableNegative622037 - 6222769394.06
Hypothetical proteinSAMEA3729745_00619Not AvailableNegative622381 - 62315727873.8
Cellulosome proteinSAMEA3729745_00620Not AvailableNegative623157 - 62512170388.8
Putative tail proteinSAMEA3729745_00621Not AvailableNegative625208 - 62767991614.9
Tail assembly proteinSAMEA3729745_00622Not AvailableNegative627666 - 62806114782.9
Hypothetical proteinSAMEA3729745_00623Not AvailableNegative628058 - 62852817488.7

Displaying genes 1 – 10 of 5279 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
SbpCausesPMC10556727
MasldCausesPMC12853991
Urinary tract infectionsCausesPMC12788680
SepticemiaCausesPMC12788680
Abdominal infectionsCausesPMC12788680
Bacterial pneumoniaCausesPMC12788680
Catheter-associated urinary tract infectionCausesPMC2900259
CautiCausesPMC2900259
CystitisCausesPMC4353729
PneumoniaCausesPMC6315841

Displaying health effects 41 – 50 of 53 in total