Klebsiella pneumoniae strain EuSCAPE_HR084

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_HR084 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. This strain is chemoheterotrophic, relying on organic compounds for energy. It typically forms chains, pairs, or singles and possesses flagella, contributing to its mobility. The optimal growth temperature for this strain is 37°C, indicating its mesophilic nature. K. pneumoniae EuSCAPE_HR084 is associated with various hosts, including Homo sapiens, Gallus gallus, and several other metazoans and plants, highlighting its broad ecological niche. It engages in a free-living biotic relationship, and its pathogenicity is notably significant in humans, where it can cause a range of serious health issues. These include bacteremia, urinary tract infections, pneumonia, and various intra-abdominal infections, among others. The strain is known for its role in neonatal sepsis and can lead to severe outcomes such as septicemia and endophthalmitis. With a single replicon and two membranes, K. pneumoniae EuSCAPE_HR084 reflects the typical characteristics of Gram-negative bacteria, which are often associated with antibiotic resistance. The strain’s ability to infect multiple hosts and cause diverse infections underlines the importance of monitoring its presence in clinical settings. Understanding its ecological versatility and pathogenic potential can aid in developing strategies to manage infections it causes, particularly in human healthcare settings where it poses a significant risk.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_HR084

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_HR084
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_HR084 genome assembly,

Gene Summary

Adenine Count

1156755 bp

Thymine Count

1156090 bp

Guanine Count

1567774 bp

Cytosine Count

1544305 bp

Genome Length

5424924 bp

Protein-coding Genes

4854 genes

Non-Coding Genes

312 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive5577 - 5588Not Available
IntegraseSAMEA3721116_00008Not AvailablePositive6811 - 803746700.5
uncharacterised proteinSAMEA3721116_00009Not AvailablePositive8130 - 907136075.8
Transcriptional regulatorSAMEA3721116_00010Not AvailablePositive9253 - 953711198.2
RoiSAMEA3721116_00011Not AvailablePositive9548 - 1032728437.3
Trna-asp;Not AvailableNot AvailablePositive9924 - 10000Not Available
uncharacterised proteinSAMEA3721116_00012Not AvailablePositive10311 - 1104827327.9
uncharacterised proteinSAMEA3721116_00013Not AvailablePositive11041 - 112297224.61
uncharacterised proteinSAMEA3721116_00014Not AvailablePositive11222 - 1153611508.2
uncharacterised proteinSAMEA3721116_00015Not AvailablePositive11533 - 1190113535.6

Displaying genes 1 – 10 of 5166 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00040072-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolC47H72O3Chemical structure of 2-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolNot available
Average685.0728Da
Monoisotopic684.5481462Da
BASm00040133'-UMPC9H11N2O9PNot available35170-03-7
Average322.167Da
Monoisotopic322.0213141Da
BASm0004019(5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyateC7H9NO3Chemical structure of (5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyateNot available
Average155.1513Da
Monoisotopic155.058243159Da
BASm0004020(1R,6S)-6-amino-5-oxocyclohex-2-ene-1-carboxylateC7H9NO3Chemical structure of (1R,6S)-6-amino-5-oxocyclohex-2-ene-1-carboxylateNot available
Average155.153Da
Monoisotopic155.058243154Da
BASm00040344-hydroxy-L-threonineC4H9NO4Chemical structure of 4-hydroxy-L-threonineNot available
Average135.1186Da
Monoisotopic135.053157781Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004165L-ascorbate 6-phosphateC6H6O9PChemical structure of L-ascorbate 6-phosphateNot available
Average253.08Da
Monoisotopic252.976589511Da
BASm0004209alpha-D-Gal-(1->6)-alpha-D-Glc-(1->3)-[L-alpha-D-Hep-(1->7)]-4-O-PO3(2-)-L-alpha-D-Hep-(1->3)-4-O-PO3(2-)-L-alpha-D-Hep-(1->5)-[alpha-Kdo-(2->4)]-alpha-Kdo-(2->6)-lipid AC143H250N2O73P4Chemical structure of alpha-D-Gal-(1->6)-alpha-D-Glc-(1->3)-[L-alpha-D-Hep-(1->7)]-4-O-PO3(2-)-L-alpha-D-Hep-(1->3)-4-O-PO3(2-)-L-alpha-D-Hep-(1->5)-[alpha-Kdo-(2->4)]-alpha-Kdo-(2->6)-lipid ANot available
Average3289.415Da
Monoisotopic3287.491707Da
BASm0004211alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-[alpha-D-Gal-(1->6)]-alpha-D-Glc-(1->3)-[L-alpha-D-Hep-(1->7)]-4-O-PO3(2-)-L-alpha-D-Hep-(1->3)-4-O-PO3(2-)-L-alpha-D-Hep-(1->5)-[alpha-Kdo-(2->4)]-alpha-Kdo-(2->6)-lipid AC155H270N2O83P4Chemical structure of alpha-D-Glc-(1->2)-alpha-D-Glc-(1->3)-[alpha-D-Gal-(1->6)]-alpha-D-Glc-(1->3)-[L-alpha-D-Hep-(1->7)]-4-O-PO3(2-)-L-alpha-D-Hep-(1->3)-4-O-PO3(2-)-L-alpha-D-Hep-(1->5)-[alpha-Kdo-(2->4)]-alpha-Kdo-(2->6)-lipid ANot available
Average3613.697Da
Monoisotopic3611.597354Da
BASm00042362-heptyl-4(1H)-quinoloneC16H21NOChemical structure of 2-heptyl-4(1H)-quinoloneNot available
Average243.35Da
Monoisotopic243.1623143Da

Displaying 51–60 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total