Klebsiella pneumoniae strain EuSCAPE_RS040

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_RS040 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, utilizing chemoheterotrophic energy sources. This strain is characterized by its ability to arrange itself in chains, pairs, and singles. It possesses flagella, indicating motility, and thrives optimally at a temperature of 37°C, categorizing it as mesophilic. This bacterium is associated with a variety of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and several other metazoans, plants, and mammals. It has been implicated in numerous health complications, particularly in humans, where it can cause serious conditions such as bacteremia, urinary tract infections, pneumonia, and sepsis. Other health effects include intra-abdominal infections, liver abscesses, and neonatal sepsis, demonstrating its pathogenicity in human populations. Klebsiella pneumoniae strain EuSCAPE_RS040 is nonsporulating and has a biotic relationship characterized as free-living, suggesting its adaptability to various environments. The presence of a single replicon and two membranes further supports its classification as a member of the Enterobacteriaceae family. The ecological insight derived from the traits of Klebsiella pneumoniae strain EuSCAPE_RS040 is its significant role in both human and animal health, along with its environmental presence. Its ability to infect diverse hosts reflects its adaptability and potential impact on public health, highlighting the importance of monitoring and understanding this pathogen in clinical and ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_RS040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_RS040
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_RS040 genome assembly,

Gene Summary

Adenine Count

1221329 bp

Thymine Count

1220880 bp

Guanine Count

1629265 bp

Cytosine Count

1603742 bp

Genome Length

5675216 bp

Protein-coding Genes

5059 genes

Non-Coding Genes

354 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Head completion-stabilization proteinSAMEA3721161_00798Not AvailablePositive794855 - 79531917527.4
Tail proteinSAMEA3721161_00799Not AvailablePositive795319 - 7955227459.82
HolinSAMEA3721161_00800Not AvailablePositive795526 - 7957418047.97
LysozymeSAMEA3721161_00801Not AvailablePositive795722 - 79623118512.5
Hypothetical proteinSAMEA3721161_00802Not AvailablePositive796236 - 79661913907.6
Lysb family lysis regulatory proteinSAMEA3721161_00803Not AvailablePositive796616 - 79704415712.8
Tail proteinSAMEA3721161_00804Not AvailablePositive797140 - 79756215668.7
Virion morphogenesis proteinSAMEA3721161_00805Not AvailablePositive797555 - 79800117329.9
Hypothetical proteinSAMEA3721161_00806Not AvailableNegative798024 - 79889033195.7
Baseplate assembly protein vSAMEA3721161_00807Not AvailablePositive798985 - 79955720638.2

Displaying genes 61 – 70 of 5413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total