Klebsiella pneumoniae strain EuSCAPE_RS040

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_RS040 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, utilizing chemoheterotrophic energy sources. This strain is characterized by its ability to arrange itself in chains, pairs, and singles. It possesses flagella, indicating motility, and thrives optimally at a temperature of 37°C, categorizing it as mesophilic. This bacterium is associated with a variety of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and several other metazoans, plants, and mammals. It has been implicated in numerous health complications, particularly in humans, where it can cause serious conditions such as bacteremia, urinary tract infections, pneumonia, and sepsis. Other health effects include intra-abdominal infections, liver abscesses, and neonatal sepsis, demonstrating its pathogenicity in human populations. Klebsiella pneumoniae strain EuSCAPE_RS040 is nonsporulating and has a biotic relationship characterized as free-living, suggesting its adaptability to various environments. The presence of a single replicon and two membranes further supports its classification as a member of the Enterobacteriaceae family. The ecological insight derived from the traits of Klebsiella pneumoniae strain EuSCAPE_RS040 is its significant role in both human and animal health, along with its environmental presence. Its ability to infect diverse hosts reflects its adaptability and potential impact on public health, highlighting the importance of monitoring and understanding this pathogen in clinical and ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_RS040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_RS040
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_RS040 genome assembly,

Gene Summary

Adenine Count

1221329 bp

Thymine Count

1220880 bp

Guanine Count

1629265 bp

Cytosine Count

1603742 bp

Genome Length

5675216 bp

Protein-coding Genes

5059 genes

Non-Coding Genes

354 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-gly;Not AvailableNot AvailablePositive18765 - 18840Not Available
Trna-gly;Not AvailableNot AvailablePositive18909 - 18984Not Available
Head-tail connector iiSAMEA3721161_00023Not AvailablePositive18936 - 1927112410.9
Trna-gly;Not AvailableNot AvailablePositive19057 - 19132Not Available
Head-tail connector proteinSAMEA3721161_00024Not AvailablePositive19268 - 1956711214.5
Hypothetical proteinSAMEA3721161_00025Not AvailablePositive19567 - 2001017586.8
uncharacterised proteinSAMEA3721161_00026Not AvailablePositive20003 - 201556277.46
uncharacterised proteinSAMEA3721161_00027Not AvailablePositive20137 - 203287326.97
Trna-asn;Not AvailableNot AvailablePositive20242 - 20317Not Available
Terminase small subunitSAMEA3721161_00028Not AvailablePositive20286 - 2064213284.7

Displaying genes 21 – 30 of 5413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total