Klebsiella pneumoniae strain EuSCAPE_RO004

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_RO004 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, utilizing a chemoheterotrophic energy source. It typically resides in host-associated environments, indicating its dependence on biological hosts for survival. This strain is capable of existing in various forms, including chains, pairs, and singles, and it possesses flagella, which contribute to its mobility. Optimal growth temperature for EuSCAPE_RO004 is 37°C, placing it within the mesophilic temperature range. It has a simple genomic structure with one replicon and features a double membrane system typical of Gram-negative bacteria. The strain exhibits a free-living biotic relationship, albeit primarily associated with a wide array of hosts, including Homo sapiens and various other species such as Gallus gallus, Danio rerio, and Canis lupus familiaris. Notably, Klebsiella pneumoniae strain EuSCAPE_RO004 is linked to numerous health effects, including bacteremia, urinary tract infections, pneumonia, and sepsis, among others. Its pathogenicity in humans is particularly concerning due to its association with severe clinical conditions such as neonatal sepsis and emphysematous pyelonephritis. The ecological insight drawn from the wide host range of this strain highlights its adaptability to diverse environments and hosts, which may facilitate its transmission and persistence. This adaptability underscores the importance of monitoring Klebsiella pneumoniae in clinical settings, given its potential to cause serious infections across a variety of species, including humans.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_RO004

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_RO004
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_RO004 genome assembly,

Gene Summary

Adenine Count

1206422 bp

Thymine Count

1204066 bp

Guanine Count

1614015 bp

Cytosine Count

1583883 bp

Genome Length

5608386 bp

Protein-coding Genes

5085 genes

Non-Coding Genes

310 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytoplasmic protein yaibSAMEA3673105_02205Not AvailablePositive2285712 - 22859729846.07
alkaline phosphataseSAMEA3673105_02206Not AvailablePositive2286077 - 228749249267.1
phosphate starvation-inducible protein psifSAMEA3673105_02207Not AvailablePositive2287584 - 228790111529.2
pyrroline-5-carboxylate reductaseSAMEA3673105_02208Not AvailableNegative2287969 - 228877828069.3
protein yaiiSAMEA3673105_02209Not AvailablePositive2288895 - 228935316874.3
periplasmic ligand-binding sensor proteinSAMEA3673105_02210Not AvailableNegative2289350 - 229006024909.3
shikimate kinase iiiSAMEA3673105_02211Not AvailablePositive2290389 - 229092219401.3
protein yaiaSAMEA3673105_02212Not AvailablePositive2290994 - 22911857296.38
arom proteinSAMEA3673105_02213Not AvailablePositive2291451 - 229211624353.0
cytoplasmic protein yaieSAMEA3673105_02214Not AvailablePositive2292194 - 229247810178.9

Displaying genes 2471 – 2480 of 5395 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total