Klebsiella pneumoniae strain EuSCAPE_RO043

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_RO043 is a Gram-negative, rod-shaped bacterium known for its pathogenicity in humans. It is a facultative anaerobe capable of thriving in various environments, primarily associated with hosts, including Homo sapiens and several animal species such as Gallus gallus, Sus scrofa, and Canis lupus familiaris. This strain exhibits a mobility feature, characterized by the presence of flagella, and typically arranges itself in chains, pairs, or singles. As a chemoheterotroph, K. pneumoniae utilizes organic compounds as an energy source, with an optimal growth temperature of 37°C, placing it within the mesophilic temperature range. The bacterium possesses a single replicon and two membranes, indicative of its complex cell structure. K. pneumoniae strain EuSCAPE_RO043 is associated with a range of significant health effects, including bacteremia, urinary tract infections, pneumonia, and various intra-abdominal infections. The strain is particularly concerning due to its potential to cause severe conditions like neonatal sepsis and septicemia, as well as infections in immunocompromised individuals. Ecologically, K. pneumoniae can exist as a free-living organism while also forming biotic relationships with a diverse array of hosts. Its ability to cause infections across multiple species highlights the strain's adaptability and pathogenic potential, emphasizing the importance of understanding its ecology and transmission pathways in both human and veterinary contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_RO043

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_RO043
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_RO043 genome assembly,

Gene Summary

Adenine Count

1166768 bp

Thymine Count

1162208 bp

Guanine Count

1570360 bp

Cytosine Count

1559499 bp

Genome Length

5458835 bp

Protein-coding Genes

4983 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipoproteinSAMEA3720953_04752Not AvailableNegative5041479 - 504217425928.5
dna-binding protein hu-alphaSAMEA3720953_04753Not AvailableNegative5042187 - 50424599477.42
protein of uncharacterised function (duf416)SAMEA3720953_04754Not AvailableNegative5042646 - 504323622640.0
endonuclease vSAMEA3720953_04755Not AvailableNegative5043279 - 504395024885.1
uroporphyrinogen iii decarboxylaseSAMEA3720953_04756Not AvailableNegative5043963 - 504502739214.4
nadh pyrophosphataseSAMEA3720953_04757Not AvailableNegative5045068 - 504584129550.4
regulator of sigma dSAMEA3720953_04758Not AvailablePositive5045935 - 504643218776.2
thiamin biosynthesis protein thicSAMEA3720953_04759Not AvailablePositive5046695 - 504859070805.2
thiamin-phosphate pyrophosphorylaseSAMEA3720953_04760Not AvailablePositive5048590 - 504922523045.6
sulfur carrier protein adenylyltransferase thifSAMEA3720953_04761Not AvailablePositive5049218 - 504997326962.8

Displaying genes 4761 – 4770 of 5192 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total