Klebsiella pneumoniae strain EuSCAPE_SC031

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain EuSCAPE_SC031 is a rod-shaped, Gram-negative bacterium that is classified as a facultative anaerobe. This organism exhibits a range of cellular arrangements, including chains, pairs, and singles, and possesses flagella, indicating mobility. It thrives optimally at 37°C, fitting within the mesophilic temperature range. The strain has a single replicon and a double membrane structure, typical of Gram-negative bacteria. As a chemoheterotroph, Klebsiella pneumoniae strain EuSCAPE_SC031 derives energy from organic compounds, and it is primarily host-associated, exhibiting a free-living biotic relationship. This bacterium has a wide host range, infecting various species, including Homo sapiens (humans), Gallus gallus (chickens), and multiple others across the animal kingdom, such as Canis lupus familiaris (domestic dogs) and Sus scrofa (pigs), as well as plants. Klebsiella pneumoniae is notable for its pathogenicity in humans, being linked to a variety of serious health effects, including bacteremia, urinary tract infections, pneumonia, and sepsis. The strain is responsible for conditions such as pyogenic liver abscesses and neonatal sepsis, highlighting its clinical significance. The ecological insight from Klebsiella pneumoniae strain EuSCAPE_SC031 is its ability to adapt to various hosts and environments, facilitating its survival and transmission. This adaptability may contribute to its role in both environmental microbiomes and clinical settings, where it poses significant health risks to humans and other animals.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain EuSCAPE_SC031

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain EuSCAPE_SC031
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain EuSCAPE_SC031 genome assembly,

Gene Summary

Adenine Count

1289657 bp

Thymine Count

1280223 bp

Guanine Count

1667146 bp

Cytosine Count

1678340 bp

Genome Length

5915366 bp

Protein-coding Genes

5215 genes

Non-Coding Genes

223 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate kinase iiiSAMEA3673004_03469Not AvailableNegative3670948 - 367148119401.3
periplasmic ligand-binding sensor proteinSAMEA3673004_03470Not AvailablePositive3671810 - 367252024911.3
protein yaiiSAMEA3673004_03471Not AvailableNegative3672517 - 367297516906.4
pyrroline-5-carboxylate reductaseSAMEA3673004_03472Not AvailablePositive3673092 - 367390128039.3
phosphate starvation-inducible protein psifSAMEA3673004_03473Not AvailableNegative3673969 - 367428611529.2
alkaline phosphataseSAMEA3673004_03474Not AvailableNegative3674378 - 367579349311.1
cytoplasmic protein yaibSAMEA3673004_03475Not AvailableNegative3675898 - 36761589846.07
multidrug-efflux transporterSAMEA3673004_03476Not AvailableNegative3676458 - 367765743015.0
putative inner membrane proteinSAMEA3673004_03477Not AvailableNegative3677827 - 367851024867.9
d-alanine--d-alanine ligaseSAMEA3673004_03478Not AvailablePositive3678610 - 367970739447.4

Displaying genes 3481 – 3490 of 5438 in total

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total