Escherichia coli strain VRES0562

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VRES0562 is a Gram-negative, rod-shaped bacterium that demonstrates mobility through the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It is mesophilic, with an optimal growth temperature of 37°C, and it typically exists in pairs or as single cells. VRES0562 is primarily host-associated, indicating its reliance on various hosts for survival and replication. Notably, it has a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and various species within the animal kingdom such as Canis lupus familiaris (domestic dogs), Felis catus (domestic cats), and several others, including some plants like Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). This strain is associated with numerous health effects, particularly in humans, where it can lead to urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as neonatal meningitis, septicemia, and hemolytic uremic syndrome (HUS). The bacterium's pathogenicity underscores its significance in clinical microbiology, as it can cause a wide array of diseases from mild diarrhea to life-threatening infections. Ecologically, the presence of E. coli strain VRES0562 in various hosts highlights its adaptability and role in both environmental and clinical contexts. Its ability to thrive in diverse biological niches underscores the importance of monitoring such strains for their potential impact on public health and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VRES0562

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VRES0562
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VRES0562 genome assembly, contig:

Gene Summary

Adenine Count

1265645 bp

Thymine Count

1265739 bp

Guanine Count

1312556 bp

Cytosine Count

1288380 bp

Genome Length

5135073 bp

Protein-coding Genes

4552 genes

Non-Coding Genes

281 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinSAMEA3752620_01505Not AvailablePositive1622533 - 16227668778.82
Recombinase family proteinSAMEA3752620_01506Not AvailablePositive1623085 - 162367521821.5
Qin prophageSAMEA3752620_01508Not AvailableNegative1624348 - 162730898234.2
Putative lom-like outer membrane proteinSAMEA3752620_01509Not AvailableNegative1627373 - 162797221797.2
Host specificity proteinSAMEA3752620_01510Not AvailableNegative1628042 - 1631455124402.0
Putative tail componentSAMEA3752620_01511Not AvailableNegative1631516 - 163203417899.5
Tail fiber componentSAMEA3752620_01512Not AvailableNegative1632061 - 163266023100.3
Putative minor tail proteinSAMEA3752620_01513Not AvailableNegative1632810 - 163350825664.9
Putative minor tail proteinSAMEA3752620_01514Not AvailableNegative1633518 - 163384712530.1
Tail length tape measure proteinSAMEA3752620_01515Not AvailableNegative1633847 - 1636912112070.0

Displaying genes 61 – 70 of 4833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total