Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | SAMEA3752620_04048 | Not Available | Negative | 4213966 - 4214061 | 3640.57 |
| isochorismatase ycdl | SAMEA3752620_04049 | Not Available | Positive | 4214192 - 4214860 | 24079.1 |
| ybl188 | SAMEA3752620_04050 | Not Available | Positive | 4214866 - 4215726 | 31954.4 |
| yahf/fdra-like protein | SAMEA3752620_04051 | Not Available | Positive | 4215821 - 4217380 | 54973.0 |
| ybl186 | SAMEA3752620_04052 | Not Available | Positive | 4217326 - 4218801 | 51926.7 |
| carbamate kinase | SAMEA3752620_04053 | Not Available | Positive | 4218794 - 4219750 | 34041.9 |
| glutamyl-trna(gln) amidotransferase subunit a | SAMEA3752620_04054 | Not Available | Positive | 4219767 - 4220156 | 14311.2 |
| permease | SAMEA3752620_04055 | Not Available | Positive | 4220182 - 4221405 | 42554.3 |
| lysr family transcriptional regulator | SAMEA3752620_04056 | Not Available | Positive | 4221483 - 4222388 | 33883.1 |
| transcriptional regulator | SAMEA3752620_04057 | Not Available | Positive | 4222589 - 4223434 | 31487.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





