Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | SAMEA3752620_03617 | Not Available | Positive | 3770488 - 3771507 | 39720.9 |
| insertion sequence is100, atp-binding protein | SAMEA3752620_03618 | Not Available | Positive | 3771507 - 3772286 | 29324.6 |
| transcriptional activator | SAMEA3752620_03619 | Not Available | Positive | 3773293 - 3774831 | 57876.2 |
| cadaverine/lysine antiporter | SAMEA3752620_03620 | Not Available | Positive | 3775197 - 3776531 | 46667.8 |
| lysine decarboxylase 1 | SAMEA3752620_03621 | Not Available | Positive | 3776611 - 3778758 | 81250.7 |
| putative oligopeptide transporter | SAMEA3752620_03622 | Not Available | Positive | 3778817 - 3780274 | 52969.7 |
| lysyl-trna synthetase | SAMEA3752620_03623 | Not Available | Positive | 3780511 - 3782028 | 57843.0 |
| putative inner membrane protein | SAMEA3752620_03624 | Not Available | Negative | 3782147 - 3782320 | 6555.44 |
| protein | SAMEA3752620_03625 | Not Available | Negative | 3782348 - 3782644 | 11441.5 |
| acyltransferase with acyl-coa n-acyltransferase domain | SAMEA3752620_03626 | Not Available | Negative | 3782871 - 3783143 | 10469.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





