Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transcriptional regulator ytfh | SAMEA3752620_03534 | Not Available | Positive | 3677722 - 3678102 | 14094.0 |
| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein | SAMEA3752620_03535 | Not Available | Negative | 3678219 - 3680162 | 70821.9 |
| cysq protein | SAMEA3752620_03536 | Not Available | Positive | 3680352 - 3681092 | 27191.4 |
| uncharacterised protein | SAMEA3752620_03537 | Not Available | Positive | 3681304 - 3682215 | 34878.3 |
| protein ytfj | SAMEA3752620_03538 | Not Available | Negative | 3682305 - 3682859 | 20495.7 |
| conserved protein, duf1107 family | SAMEA3752620_03539 | Not Available | Positive | 3683184 - 3683390 | 8072.24 |
| putative transporter | SAMEA3752620_03540 | Not Available | Negative | 3683468 - 3684811 | 49765.6 |
| methionine sulfoxide reductase a | SAMEA3752620_03542 | Not Available | Negative | 3685134 - 3685772 | 23335.3 |
| putative outer membrane protein assembly factor | SAMEA3752620_03543 | Not Available | Positive | 3685978 - 3687711 | 64876.7 |
| translocation and assembly module for autotransporter export, inner membrane subunit | SAMEA3752620_03544 | Not Available | Positive | 3687708 - 3691487 | 136743.0 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





