Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase subunit d | SAMEA3752620_03464 | Not Available | Negative | 3611610 - 3611969 | 13107.8 |
| fumarate reductase subunit c | SAMEA3752620_03465 | Not Available | Negative | 3611980 - 3612375 | 15015.8 |
| fumarate reductase iron-sulfur subunit | SAMEA3752620_03466 | Not Available | Negative | 3612386 - 3613120 | 27124.5 |
| fumarate reductase flavoprotein subunit | SAMEA3752620_03467 | Not Available | Negative | 3613113 - 3614921 | 66038.6 |
| lysyl-trna synthetase | SAMEA3752620_03468 | Not Available | Positive | 3615246 - 3616223 | 36978.1 |
| transporter | SAMEA3752620_03469 | Not Available | Positive | 3616487 - 3617944 | 52996.9 |
| uncharacterised protein | SAMEA3752620_03470 | Not Available | Positive | 3618007 - 3618321 | 11954.3 |
| inner membrane protein | SAMEA3752620_03471 | Not Available | Positive | 3618330 - 3618632 | 12193.2 |
| mechanosensitive ion channel family protein | SAMEA3752620_03472 | Not Available | Negative | 3618663 - 3621986 | 123948.0 |
| phosphatidylserine decarboxylase proenzyme | SAMEA3752620_03473 | Not Available | Negative | 3622008 - 3622976 | 35950.4 |
Pathways
388 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





