Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high affinity ribose transport atp-binding protein rbsa | SAMEA3752620_03433 | Not Available | Positive | 3578963 - 3580468 | 55031.0 |
| high-affinity ribose transport system permease protein rbsc | SAMEA3752620_03434 | Not Available | Positive | 3580473 - 3581438 | 33454.0 |
| d-ribose transporter subunit rbsb | SAMEA3752620_03435 | Not Available | Positive | 3581463 - 3582353 | 30940.2 |
| ribokinase | SAMEA3752620_03436 | Not Available | Positive | 3582479 - 3583408 | 32278.4 |
| ribose operon repressor | SAMEA3752620_03437 | Not Available | Positive | 3583412 - 3584404 | 36614.1 |
| major facilitator superfamily protein | SAMEA3752620_03438 | Not Available | Negative | 3584370 - 3585797 | 51541.0 |
| gntr family transcriptional regulator | SAMEA3752620_03439 | Not Available | Negative | 3585820 - 3586512 | 26135.7 |
| putative transposase | SAMEA3752620_03440 | Not Available | Positive | 3587450 - 3589174 | 64889.6 |
| heat resistant agglutinin 1 | SAMEA3752620_03441 | Not Available | Positive | 3589766 - 3590506 | 27148.1 |
| putative membrane-associated, metal-dependent hydrolase | SAMEA3752620_03442 | Not Available | Positive | 3590688 - 3592190 | 55919.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





