Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii | SAMEA3752620_03382 | Not Available | Negative | 3521761 - 3522861 | 40589.1 |
| chromosomal replication initiation protein | SAMEA3752620_03383 | Not Available | Negative | 3522866 - 3524269 | 52553.7 |
| 50s ribosomal protein l34 | SAMEA3752620_03384 | Not Available | Positive | 3524876 - 3525016 | 5380.74 |
| ribonuclease p protein component | SAMEA3752620_03385 | Not Available | Positive | 3525066 - 3525392 | 12466.3 |
| inner membrane protein | SAMEA3752620_03386 | Not Available | Positive | 3525616 - 3527262 | 61543.5 |
| trna modification gtpase trme | SAMEA3752620_03387 | Not Available | Positive | 3527368 - 3528732 | 49233.8 |
| tryptophanase | SAMEA3752620_03388 | Not Available | Positive | 3529269 - 3530684 | 52776.4 |
| low affinity tryptophan permease | SAMEA3752620_03389 | Not Available | Positive | 3530776 - 3532023 | 45257.3 |
| multidrug resistance protein | SAMEA3752620_03390 | Not Available | Positive | 3532282 - 3533457 | 41608.4 |
| dna-binding transcriptional regulator yidz | SAMEA3752620_03391 | Not Available | Positive | 3533432 - 3534391 | 36919.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





