Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport protein ysaa | SAMEA3752620_03249 | Not Available | Negative | 3380135 - 3380608 | 17377.1 |
| dna-binding transcriptional repressor | SAMEA3752620_03250 | Not Available | Negative | 3380710 - 3381543 | 30538.8 |
| 2,3-diketo-l-gulonate reductase | SAMEA3752620_03251 | Not Available | Positive | 3381759 - 3382757 | 36646.9 |
| beta-galactosidase | SAMEA3752620_03252 | Not Available | Positive | 3382769 - 3383236 | 17566.0 |
| 2,3-diketo-l-gulonate trap transporter, small permease protein | SAMEA3752620_03253 | Not Available | Positive | 3383354 - 3383827 | 17516.9 |
| 2,3-diketo-l-gulonate trap transporter, large permease protein | SAMEA3752620_03254 | Not Available | Positive | 3383830 - 3385107 | 45371.0 |
| 2,3-diketo-l-gulonate trap transporter, substrate-binding periplasmic protein | SAMEA3752620_03255 | Not Available | Positive | 3385120 - 3386106 | 36045.2 |
| l-xylulose/3-keto-l-gulonate kinase | SAMEA3752620_03256 | Not Available | Positive | 3386110 - 3387606 | 55223.1 |
| 3-keto-l-gulonate-6-phosphate decarboxylase | SAMEA3752620_03257 | Not Available | Positive | 3387603 - 3388265 | 23517.2 |
| l-xylulose 5-phosphate 3-epimerase | SAMEA3752620_03258 | Not Available | Positive | 3388258 - 3389118 | 32498.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





