Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein | SAMEA3752620_03239 | Not Available | Negative | 3366520 - 3366861 | 12523.9 |
| xylulose kinase | SAMEA3752620_03240 | Not Available | Negative | 3367030 - 3368484 | 52667.4 |
| d-xylose isomerase | SAMEA3752620_03241 | Not Available | Negative | 3368556 - 3369878 | 49702.6 |
| d-xylose transporter subunit xylf | SAMEA3752620_03242 | Not Available | Positive | 3370244 - 3371236 | 35722.1 |
| d-xylose transport atp-binding protein xylg | SAMEA3752620_03243 | Not Available | Positive | 3371314 - 3372855 | 56390.8 |
| xylose transport system permease xylh | SAMEA3752620_03244 | Not Available | Positive | 3372833 - 3374014 | 41049.5 |
| dna-binding transcriptional activator | SAMEA3752620_03245 | Not Available | Positive | 3374092 - 3375270 | 44893.7 |
| putative endo-beta-n-acetylglucosaminidase | SAMEA3752620_03246 | Not Available | Negative | 3375378 - 3376202 | 30869.3 |
| alpha-amylase | SAMEA3752620_03247 | Not Available | Positive | 3376522 - 3378552 | 75767.5 |
| class i and ii aminotransferase | SAMEA3752620_03248 | Not Available | Positive | 3378730 - 3379983 | 46715.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





