Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane lipoprotein lolb | SAMEA3752620_03166 | Not Available | Positive | 3295690 - 3296313 | 23568.1 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMEA3752620_03167 | Not Available | Positive | 3296313 - 3297164 | 30945.1 |
| ribose-phosphate pyrophosphokinase | SAMEA3752620_03168 | Not Available | Positive | 3297249 - 3298262 | 36651.3 |
| sulfate transporter ychm | SAMEA3752620_03169 | Not Available | Positive | 3298414 - 3300066 | 58419.6 |
| putative membrane protein ychh | SAMEA3752620_03170 | Not Available | Negative | 3300121 - 3300399 | 10486.9 |
| peptidyl-trna hydrolase | SAMEA3752620_03171 | Not Available | Positive | 3300677 - 3301261 | 21083.5 |
| gtp-binding protein | SAMEA3752620_03172 | Not Available | Positive | 3301378 - 3302469 | 39655.5 |
| pts-dependent dihydroxyacetone kinase operon regulator (sigma-54 dependent transcriptional regulator) | SAMEA3752620_03173 | Not Available | Negative | 3302874 - 3304793 | 70471.8 |
| pts-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit | SAMEA3752620_03174 | Not Available | Positive | 3305021 - 3306091 | 38220.4 |
| dihydroxyacetone kinase subunit dhal | SAMEA3752620_03175 | Not Available | Positive | 3306102 - 3306734 | 22605.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





