Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | SAMEA3752620_03134 | Not Available | Positive | 3263790 - 3266465 | 96132.5 |
| thymidine kinase | SAMEA3752620_03135 | Not Available | Negative | 3266767 - 3267384 | 23400.8 |
| h-ns histone family protein | SAMEA3752620_03136 | Not Available | Positive | 3267988 - 3268401 | 15540.5 |
| utp--glucose-1-phosphate uridylyltransferase | SAMEA3752620_03137 | Not Available | Negative | 3268546 - 3269454 | 32944.2 |
| orphan two-component response regulator | SAMEA3752620_03138 | Not Available | Negative | 3269656 - 3270669 | 37274.5 |
| patatin | SAMEA3752620_03139 | Not Available | Negative | 3270761 - 3271666 | 33041.0 |
| sec-c motif domain-containing protein | SAMEA3752620_03140 | Not Available | Positive | 3271779 - 3272237 | 17061.3 |
| formyltetrahydrofolate deformylase | SAMEA3752620_03141 | Not Available | Positive | 3272287 - 3273129 | 32021.7 |
| Trna-tyr | Not Available | Not Available | Positive | 3273289 - 3273373 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 3273408 - 3273492 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





