Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside triphosphate hydrolase domain | SAMEA3752620_02915 | Not Available | Positive | 3041287 - 3042945 | 63560.9 |
| virulence protein | SAMEA3752620_02916 | Not Available | Negative | 3042942 - 3043934 | 38277.7 |
| macrolide-specific efflux protein | SAMEA3752620_02917 | Not Available | Positive | 3044049 - 3045164 | 40739.5 |
| macrolide export atp-binding/permease protein | SAMEA3752620_02918 | Not Available | Positive | 3045161 - 3047107 | 70650.7 |
| stationary phase/starvation inducible regulatory protein cspd | SAMEA3752620_02919 | Not Available | Negative | 3047180 - 3047404 | 7969.41 |
| atp-dependent clp protease adaptor protein | SAMEA3752620_02920 | Not Available | Positive | 3047727 - 3048047 | 12179.7 |
| atp-dependent clp protease atp-binding subunit | SAMEA3752620_02921 | Not Available | Positive | 3048078 - 3050354 | 84211.9 |
| Trna-ser | Not Available | Not Available | Positive | 3051058 - 3051145 | Not Available |
| translation initiation factor if-1 | SAMEA3752620_02924 | Not Available | Negative | 3051399 - 3051617 | 8250.1 |
| leucyl/phenylalanyl-trna-protein transferase | SAMEA3752620_02925 | Not Available | Negative | 3051902 - 3052606 | 26620.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





