Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein involved in utilization of dna as a carbon source | SAMEA3752620_02621 | Not Available | Positive | 2772085 - 2772525 | 16803.0 |
| protein involved in utilization of dna as a carbon source | SAMEA3752620_02622 | Not Available | Positive | 2772515 - 2772919 | 15101.0 |
| outer membrane porin hofq | SAMEA3752620_02623 | Not Available | Positive | 2772861 - 2774069 | 43534.3 |
| shikimate kinase i | SAMEA3752620_02624 | Not Available | Positive | 2774470 - 2774991 | 19539.2 |
| 3-dehydroquinate synthase | SAMEA3752620_02625 | Not Available | Positive | 2775048 - 2776136 | 38886.3 |
| damx protein | SAMEA3752620_02626 | Not Available | Positive | 2776228 - 2777514 | 46092.2 |
| dna adenine methylase | SAMEA3752620_02627 | Not Available | Positive | 2777621 - 2778457 | 32087.2 |
| ribulose-phosphate 3-epimerase | SAMEA3752620_02628 | Not Available | Positive | 2778475 - 2779152 | 24555.7 |
| phosphoglycolate phosphatase | SAMEA3752620_02629 | Not Available | Positive | 2779145 - 2779903 | 27390.8 |
| tryptophanyl-trna synthetase | SAMEA3752620_02630 | Not Available | Positive | 2779896 - 2780900 | 37439.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





