Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux system protein | SAMEA3752620_02433 | Not Available | Positive | 2566999 - 2570103 | 111370.0 |
| lipoprotein | SAMEA3752620_02434 | Not Available | Positive | 2570356 - 2570577 | 7551.28 |
| putative abc transporter, substrate-binding protein | SAMEA3752620_02435 | Not Available | Positive | 2571008 - 2572033 | 37014.8 |
| abc transporter permease | SAMEA3752620_02436 | Not Available | Positive | 2572101 - 2573282 | 43368.0 |
| abc transporter permease | SAMEA3752620_02437 | Not Available | Positive | 2573292 - 2574395 | 41401.7 |
| abc transporter atp-binding protein | SAMEA3752620_02438 | Not Available | Positive | 2574403 - 2575161 | 28580.9 |
| Trna-thr | Not Available | Not Available | Positive | 2575379 - 2575454 | Not Available |
| is600 orfb family protein | SAMEA3752620_02442 | Not Available | Positive | 2575662 - 2576513 | 33124.7 |
| dipeptide abc transporter, substrate-binding protein | SAMEA3752620_02443 | Not Available | Positive | 2577220 - 2578827 | 60254.8 |
| uncharacterised protein | SAMEA3752620_02444 | Not Available | Negative | 2578890 - 2579117 | 8599.81 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





