Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multicopper oxidase | SAMEA3752620_02042 | Not Available | Positive | 2162316 - 2163866 | 56602.6 |
| glucose dehydrogenase | SAMEA3752620_02043 | Not Available | Negative | 2164062 - 2166452 | 86694.0 |
| hypoxanthine-guanine phosphoribosyltransferase | SAMEA3752620_02044 | Not Available | Positive | 2166658 - 2167194 | 20116.4 |
| carbonic anhydrase 2 yadf | SAMEA3752620_02045 | Not Available | Negative | 2167235 - 2167897 | 25098.2 |
| abc transporter atp-binding protein | SAMEA3752620_02046 | Not Available | Positive | 2168006 - 2168932 | 34649.2 |
| inner membrane transport permease yadh | SAMEA3752620_02047 | Not Available | Positive | 2168929 - 2169699 | 28517.9 |
| pts system transporter subunit iia | SAMEA3752620_02048 | Not Available | Positive | 2169804 - 2170244 | 16534.9 |
| putative polysaccharide deacetylase | SAMEA3752620_02049 | Not Available | Positive | 2170308 - 2171537 | 46388.8 |
| aspartate l-decarboxylase | SAMEA3752620_02050 | Not Available | Negative | 2171541 - 2171921 | 13834.5 |
| putative transposase | SAMEA3752620_02051 | Not Available | Positive | 2172195 - 2173115 | 35712.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





