Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transport system, permease protein | SAMEA3752620_01987 | Not Available | Negative | 2099469 - 2101079 | 59434.6 |
| thiamine transporter substrate binding subunit | SAMEA3752620_01988 | Not Available | Negative | 2101055 - 2102038 | 36222.3 |
| putative substrate-binding protein | SAMEA3752620_01990 | Not Available | Negative | 2102202 - 2103857 | 64045.8 |
| 3-isopropylmalate dehydratase small subunit | SAMEA3752620_01992 | Not Available | Negative | 2104185 - 2104790 | 22604.8 |
| 3-isopropylmalate dehydratase large subunit | SAMEA3752620_01993 | Not Available | Negative | 2104801 - 2106201 | 49884.7 |
| 3-isopropylmalate dehydrogenase | SAMEA3752620_01994 | Not Available | Negative | 2106204 - 2107295 | 39536.3 |
| 2-isopropylmalate synthase | SAMEA3752620_01995 | Not Available | Negative | 2107295 - 2108866 | 57287.1 |
| leucine transcriptional activator | SAMEA3752620_01997 | Not Available | Positive | 2109704 - 2110648 | 35700.7 |
| acetolactate synthase 3 catalytic subunit | SAMEA3752620_01998 | Not Available | Positive | 2110966 - 2112690 | 62963.0 |
| acetolactate synthase 3 regulatory subunit | SAMEA3752620_01999 | Not Available | Positive | 2112693 - 2113184 | 18035.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





