Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | SAMEA3752620_01833 | Not Available | Negative | 1941042 - 1941167 | 4415.41 |
| high-affinity gluconate transporter | SAMEA3752620_01834 | Not Available | Negative | 1941188 - 1942531 | 47141.0 |
| mannonate dehydratase | SAMEA3752620_01835 | Not Available | Positive | 1942871 - 1944055 | 44796.5 |
| d-mannonate oxidoreductase, nad-binding | SAMEA3752620_01836 | Not Available | Positive | 1944136 - 1945596 | 53673.4 |
| uxu operon transcriptional regulator | SAMEA3752620_01837 | Not Available | Positive | 1945858 - 1946583 | 27599.9 |
| dna replication/recombination/repair protein | SAMEA3752620_01838 | Not Available | Positive | 1946997 - 1947380 | 14787.9 |
| phosphoenolpyruvate-protein phosphoryltransferase ppte | SAMEA3752620_01839 | Not Available | Negative | 1947428 - 1947769 | 12004.6 |
| dna-binding transcriptional regulator | SAMEA3752620_01840 | Not Available | Negative | 1947806 - 1948762 | 36418.6 |
| isoaspartyl dipeptidase | SAMEA3752620_01841 | Not Available | Negative | 1948782 - 1949954 | 41077.4 |
| putative transporter | SAMEA3752620_01842 | Not Available | Negative | 1949967 - 1950428 | 16194.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





