Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VRES0562 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1265645 bp
Thymine Count
1265739 bp
Guanine Count
1312556 bp
Cytosine Count
1288380 bp
Genome Length
5135073 bp
Protein-coding Genes
4552 genes
Non-Coding Genes
281 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised protein | SAMEA3752620_01823 | Not Available | Negative | 1931606 - 1932001 | 14791.0 |
| tyrosine recombinase | SAMEA3752620_01824 | Not Available | Positive | 1932261 - 1932863 | 23022.9 |
| tyrosine recombinase | SAMEA3752620_01825 | Not Available | Positive | 1933341 - 1933937 | 23131.7 |
| fimbrial protein | SAMEA3752620_01826 | Not Available | Positive | 1934419 - 1934967 | 18171.3 |
| type-1 fimbrial protein fimi | SAMEA3752620_01827 | Not Available | Positive | 1935074 - 1935571 | 17706.1 |
| type i fimbrial chaperone | SAMEA3752620_01828 | Not Available | Positive | 1935608 - 1936333 | 26660.5 |
| outer membrane usher protein fimd | SAMEA3752620_01829 | Not Available | Positive | 1936400 - 1939036 | 96586.9 |
| fimf protein | SAMEA3752620_01830 | Not Available | Positive | 1939046 - 1939576 | 18700.3 |
| p pilus assembly protein, pilin fima | SAMEA3752620_01831 | Not Available | Positive | 1939589 - 1940092 | 17389.4 |
| fimh protein | SAMEA3752620_01832 | Not Available | Positive | 1940112 - 1941014 | 31447.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





