Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative prophage protein | SAMEA3472110_05942 | Not Available | Negative | 5894873 - 5895295 | 16057.4 |
| transcription regulatory protein | SAMEA3472110_05943 | Not Available | Negative | 5895312 - 5896037 | 26681.2 |
| replication protein in prophage | SAMEA3472110_05944 | Not Available | Negative | 5896072 - 5896737 | 25533.4 |
| is200 transposase orfb | SAMEA3472110_05945 | Not Available | Negative | 5897396 - 5898628 | 46659.6 |
| is200 transposase orfa | SAMEA3472110_05946 | Not Available | Positive | 5898681 - 5899085 | 15328.6 |
| transposase | SAMEA3472110_05947 | Not Available | Negative | 5899247 - 5900026 | 30366.4 |
| transposase | SAMEA3472110_05948 | Not Available | Negative | 5901366 - 5901713 | 13056.0 |
| putative transposase subunit | SAMEA3472110_05949 | Not Available | Negative | 5901713 - 5902363 | 24194.3 |
| transposase | SAMEA3472110_05950 | Not Available | Negative | 5903934 - 5904770 | 32451.8 |
| transposase | SAMEA3472110_05951 | Not Available | Negative | 5904806 - 5905096 | 11449.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





