Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein | SAMEA3472110_05929 | Not Available | Negative | 5883913 - 5884269 | 13299.5 |
| inner membrane protein yhah | SAMEA3472110_05930 | Not Available | Negative | 5884511 - 5884876 | 14281.7 |
| uncharacterised protein | SAMEA3472110_05932 | Not Available | Positive | 5885451 - 5885726 | 8957.16 |
| outer membrane precursor lom | SAMEA3472110_05933 | Not Available | Negative | 5886288 - 5886887 | 21750.1 |
| putative host specificity protein | SAMEA3472110_05934 | Not Available | Negative | 5886957 - 5888618 | 59822.6 |
| aminoglycoside 3'-phosphotransferase | SAMEA3472110_05935 | Not Available | Positive | 5888773 - 5889588 | 30980.8 |
| transposase, is903.b | SAMEA3472110_05936 | Not Available | Negative | 5889750 - 5890673 | 34939.1 |
| is3 element protein insf | SAMEA3472110_05937 | Not Available | Positive | 5891023 - 5891682 | 25414.5 |
| putative tail fiber protein | SAMEA3472110_05939 | Not Available | Negative | 5892362 - 5893879 | 54608.5 |
| uncharacterised protein | SAMEA3472110_05940 | Not Available | Negative | 5893876 - 5894502 | 23935.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





