Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein rop | SAMEA3472110_05845 | Not Available | Positive | 5817915 - 5818076 | 6218.23 |
| similar to tnpa transposase | SAMEA3472110_05846 | Not Available | Negative | 5818676 - 5820070 | 51331.9 |
| transposase, is26 | SAMEA3472110_05847 | Not Available | Positive | 5820261 - 5821013 | 29245.3 |
| hygromycin-b 4-o-kinase | SAMEA3472110_05848 | Not Available | Negative | 5821435 - 5822460 | 38034.7 |
| uncharacterised protein | SAMEA3472110_05849 | Not Available | Negative | 5822447 - 5822668 | 7936.42 |
| aac3-vi | SAMEA3472110_05850 | Not Available | Negative | 5822689 - 5823465 | 27907.6 |
| putative anti-restriction protein | SAMEA3472110_05860 | Not Available | Negative | 5829835 - 5830305 | 17878.4 |
| putative transposase | SAMEA3472110_05861 | Not Available | Negative | 5830362 - 5831537 | 43972.7 |
| plasmid sos inhibition protein a | SAMEA3472110_05862 | Not Available | Negative | 5831667 - 5832386 | 27664.9 |
| plasmid sos inhibition protein b | SAMEA3472110_05863 | Not Available | Negative | 5832383 - 5832817 | 15864.0 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





