Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hnh endonuclease family protein | SAMEA3472110_05835 | Not Available | Positive | 5810730 - 5811170 | 17149.3 |
| prophage terminase, small subunit | SAMEA3472110_05836 | Not Available | Positive | 5811318 - 5811815 | 18722.4 |
| prophage terminase, large subunit | SAMEA3472110_05837 | Not Available | Positive | 5811799 - 5813460 | 62139.1 |
| putative prophage protein | SAMEA3472110_05838 | Not Available | Positive | 5813460 - 5813750 | 11462.0 |
| uncharacterised protein | SAMEA3472110_05839 | Not Available | Negative | 5813833 - 5814084 | 9167.97 |
| putative magnesium chelatase | SAMEA3472110_05840 | Not Available | Positive | 5814639 - 5815895 | 45951.2 |
| protein yife | SAMEA3472110_05841 | Not Available | Negative | 5815921 - 5816259 | 13134.2 |
| lysr-family transcriptional regulator (h-ns-dependent flhd regulator) | SAMEA3472110_05842 | Not Available | Positive | 5816378 - 5817217 | 31747.9 |
| Trna-trp | Not Available | Not Available | Positive | 5817313 - 5817388 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 5817397 - 5817473 | Not Available |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





