Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage repressor protein ci | SAMEA3472110_05756 | Not Available | Positive | 5745041 - 5745454 | 15858.0 |
| uncharacterised protein | SAMEA3472110_05757 | Not Available | Positive | 5746451 - 5746771 | 12230.6 |
| exonuclease | SAMEA3472110_05758 | Not Available | Positive | 5746802 - 5748106 | 48247.3 |
| colicin protein | SAMEA3472110_05759 | Not Available | Negative | 5748267 - 5748389 | 4261.12 |
| yaga | SAMEA3472110_05760 | Not Available | Negative | 5748668 - 5750014 | 51340.8 |
| yafb | SAMEA3472110_05761 | Not Available | Positive | 5750368 - 5750961 | 22279.6 |
| transposase tnpa, tn21 | SAMEA3472110_05762 | Not Available | Negative | 5751199 - 5754165 | 111121.0 |
| transposon tn21 resolvase | SAMEA3472110_05763 | Not Available | Negative | 5754168 - 5754728 | 21330.6 |
| modulator protein | SAMEA3472110_05764 | Not Available | Negative | 5754854 - 5755054 | 7066.12 |
| class 1 integron integrase protein inti1 | SAMEA3472110_05765 | Not Available | Negative | 5755407 - 5756420 | 38383.4 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





