Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-succinylglutamate 5-semialdehyde dehydrogenase | SAMEA3472110_05677 | Not Available | Negative | 5670799 - 5672277 | 52958.4 |
| arginine n-succinyltransferase | SAMEA3472110_05678 | Not Available | Negative | 5672274 - 5673308 | 38472.0 |
| succinylornithine transaminase | SAMEA3472110_05679 | Not Available | Negative | 5673305 - 5674525 | 43548.6 |
| exonuclease iii | SAMEA3472110_05680 | Not Available | Positive | 5674971 - 5675777 | 30942.8 |
| kup system potassium uptake protein | SAMEA3472110_05690 | Not Available | Positive | 5687541 - 5689409 | 69298.3 |
| d-ribose high-affinity transporter | SAMEA3472110_05691 | Not Available | Positive | 5689576 - 5689995 | 15293.4 |
| high affinity ribose transport atp-binding protein rbsa | SAMEA3472110_05692 | Not Available | Positive | 5690003 - 5691508 | 55045.0 |
| high-affinity ribose transport system permease protein rbsc | SAMEA3472110_05693 | Not Available | Positive | 5691513 - 5692478 | 33454.0 |
| d-ribose transporter subunit rbsb | SAMEA3472110_05694 | Not Available | Positive | 5692503 - 5693393 | 30940.2 |
| ribokinase | SAMEA3472110_05695 | Not Available | Positive | 5693519 - 5694448 | 32259.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





