Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein | SAMEA3472110_05613 | Not Available | Positive | 5599171 - 5599875 | 25903.5 |
| uncharacterised protein | SAMEA3472110_05614 | Not Available | Positive | 5601178 - 5602863 | 65343.9 |
| atp-dependent rna helicase rhle | SAMEA3472110_05615 | Not Available | Negative | 5602968 - 5604329 | 49977.4 |
| tetr family transcriptional regulator | SAMEA3472110_05616 | Not Available | Positive | 5604558 - 5605229 | 25018.1 |
| hlyd-family secretion protein | SAMEA3472110_05617 | Not Available | Positive | 5605232 - 5606227 | 36287.7 |
| abc transporter | SAMEA3472110_05618 | Not Available | Positive | 5606220 - 5607956 | 63164.3 |
| abc transporter permease | SAMEA3472110_05619 | Not Available | Positive | 5607949 - 5609082 | 42062.4 |
| abc transporter permease | SAMEA3472110_05620 | Not Available | Positive | 5609093 - 5610199 | 41568.2 |
| inner membrane protein | SAMEA3472110_05621 | Not Available | Negative | 5610161 - 5610571 | 15465.6 |
| putative endonuclease/exonuclease/phosphatase | SAMEA3472110_05622 | Not Available | Positive | 5610704 - 5611465 | 28791.4 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





