Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | SAMEA3472110_05497 | Not Available | Negative | 5488951 - 5490213 | 46178.1 |
| lysr family transcriptional regulator | SAMEA3472110_05498 | Not Available | Positive | 5490335 - 5491270 | 34410.7 |
| putative asp/glu/hydantoin racemase | SAMEA3472110_05499 | Not Available | Negative | 5491257 - 5491949 | 25406.7 |
| arabinose-proton symporter | SAMEA3472110_05500 | Not Available | Negative | 5492078 - 5493496 | 51687.6 |
| 2-keto-3-deoxygluconate oxidoreductase | SAMEA3472110_05501 | Not Available | Negative | 5493811 - 5494572 | 27042.7 |
| 5-keto-4-deoxyuronate isomerase | SAMEA3472110_05502 | Not Available | Negative | 5494602 - 5495438 | 31092.2 |
| putative acyltransferase | SAMEA3472110_05503 | Not Available | Negative | 5495725 - 5496906 | 40997.1 |
| membrane protein | SAMEA3472110_05504 | Not Available | Positive | 5497161 - 5498390 | 45101.9 |
| bipartite regulator domain | SAMEA3472110_05505 | Not Available | Positive | 5498850 - 5499482 | 24387.3 |
| putative transcriptional regulator | SAMEA3472110_05506 | Not Available | Positive | 5499816 - 5500625 | 30792.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





