Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0288 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1477659 bp
Thymine Count
1466531 bp
Guanine Count
1487187 bp
Cytosine Count
1489797 bp
Genome Length
5922648 bp
Protein-coding Genes
5107 genes
Non-Coding Genes
672 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein | SAMEA3472110_05471 | Not Available | Negative | 5466845 - 5467150 | 9447.98 |
| protein involved in biofilm formation | SAMEA3472110_05474 | Not Available | Negative | 5468345 - 5468593 | 9733.86 |
| regulator of acid resistance, influenced by indole | SAMEA3472110_05475 | Not Available | Negative | 5468706 - 5468972 | 9710.59 |
| protein | SAMEA3472110_05476 | Not Available | Negative | 5469316 - 5469552 | 8720.46 |
| putative signal transduction protein | SAMEA3472110_05477 | Not Available | Positive | 5469866 - 5471077 | 45268.5 |
| merr family transcriptional regulator | SAMEA3472110_05478 | Not Available | Positive | 5471282 - 5472013 | 28220.1 |
| protein | SAMEA3472110_05479 | Not Available | Positive | 5472234 - 5472638 | 15828.0 |
| isocitrate dehydrogenase | SAMEA3472110_05480 | Not Available | Negative | 5473770 - 5475020 | 45772.4 |
| ribosomal large subunit pseudouridine synthase e (rrna pseudouridylate synthase e) | SAMEA3472110_05481 | Not Available | Positive | 5475192 - 5475845 | 24881.8 |
| putative nudix-family hydrolase | SAMEA3472110_05482 | Not Available | Positive | 5475855 - 5476316 | 17433.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





